A Theological Question for the Times (1889); The Authority of the Holy Scripture (1891); The Bible, the Church and the Reason (1892); The Higher Criticism of the Hexateuch (1893); The Messiah of the Gospels (1894) The Messiah of the Apostles (1894); New Light on the Life of Jesus (1904); The Ethical Teaching of Jesus (1904); A Critical and Exegetical Commentary on the Book of Psalms (2 vols., 1906-1907), in which he was assisted by his daughter; and The Virgin Birth of Our Lord (1909).
His extant commentaries (those on Canticles, on the Prophets, on the book of Psalms and on the Pauline epistles - the last the most valuable) are among the best performances of the fathers of the church.
The earliest known edition of the Compendious Book of Psalms and Spiritual Songs (of which an unique copy is extant) dates back to 1567, though the contents were probably published in broad sheets during John Wedderburn's lifetime.
It is probable that he was the author of the greater portion of the Compendious Book of Psalms and Spiritual Songs which contains a large number of hymns from the German.
In fact in the Northern Midlands, and in the North even before the middle of the r4th century, the book of Psalms had been twice rendered into English, and before the end of the same century, probably before the great Wycliffite versions had spread over the country, the whole of the New Testament had been translated by different hands into one or other of the dialects of this part of the country.