Besides the works already noticed, he wrote De arte critica (1597); De Antichristo (1605); Pro auctoritate ecclesiae in decidendis fidei controversiis libellus; Scaliger hypololymaeus (1607), a virulent attack on Scaliger; and latterly the anti-jesuitical works, Flagellum Jesuiticum (1632); Mysteria patrum jesuitorum (1633); and Arcana societatis Jesu (1635).
The ascription to Sir Francis of Arcana Aulica: or Walsingham's Manual of Prudential Maxims for the Statesman and the Courtier is erroneous; the book is really the translation of a French treatise by one Edward Walsingham who flourished c. 1643-1659.
Hartley translated Heaven and Hell (1778) and True Christian Religion (1781); Clowes, who taught New Church doctrine in the existing churches and was opposed to the forming of new organizations, translated 17 volumes, including the Arcana Coelestia, and published over 50 volumes of exposition and defence.
Three hundred and twenty-nine letters to Augustus of Saxony dating from the 17th of November 1565 to the 8th of September 1581, and one hundred and eleven letters to the chancellor Mordeisen dating from November 1559 to the summer of 1565, are preserved in MS. in the Saxon archives, and were published by Ludovicus at Halle in 1699 under the title Arcana seculi decimi sexti.
Giusto Fontanini's Storia arcana della vita di Pietro Sarpi (1863), a bitter libel, is nevertheless important for the letters of Sarpi it contains, as Griselini's Memorie e aneddote (1760) is from the author's access to Sarpi's unpublished writings, afterwards unfortunately destroyed by fire.
His theological writings roughly fall into four groups: (1) books of spiritual philosophy, including The Divine Love and Wisdom, The Divine Providence, The Intercourse between the Soul and the Body, Conjugial Love; (2) Expository, including Arcana Celestia (giving the spiritual sense of Genesis and Exodus), The Apocalypse Revealed, The Apocalypse Explained; (3) Doctrinal, including The New Jerusalem and its Heavenly Doctrines, The Four Chief Doctrines, The Doctrine of Charity, The True Christian Religion, Canons of the New Church; (4) Eschatological, including Heaven and Hell, and The Last Judgment.